PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01151.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 479aa    MW: 53403.2 Da    PI: 8.5977
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01151.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.7e-10175216445
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                               k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Rsa1.0_01151.1_g00003.1 175 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 216
                              5889*************************8766666655544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.9E-7172249IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289174218IPR004827Basic-leucine zipper domain
PfamPF001702.2E-7175216IPR004827Basic-leucine zipper domain
CDDcd147081.70E-22176228No hitNo description
SuperFamilySSF579596.25E-7176218No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-7177220No hitNo description
PROSITE patternPS000360179194IPR004827Basic-leucine zipper domain
PfamPF141442.2E-27257332IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MANHRVISEA INHNDNHHLS YSLLHGLSNN PPPPGFINQD GSSSFDYGEL EEAMVLQAVK  60
YRSDEAKPRG GATTLEMFPS WPIRTHQSLP TESSKSGGES SDSGSANFSG KAESQQLESP  120
MSSKRNHNLM LQHRNNNKVN SSPTSGLPST SRTPAPPKAS EDKMKATTSG KLLDAKTLRR  180
LAQNREAARK SRLRKKAYVQ QLESSRIKLS QLEQELQRAR SQGMFMGGCG PPGPNITSGA  240
AMFNMEYGRW LEDDNRHISE IRTGLQAHLS DNDLRLIVDS YIAHFDEVFR LKAVGAKADV  300
FHLIIGTWMS PAERCFIWMA GFRPSDSIKI LVSQMDLLTE QQLMGIYGLQ HSSQQAEEAL  360
SQGLEQLQQS LMDTLAASQV IDGMQQIAVA LGKVSNLEGF IRQADNLRQQ TVHQLRRILT  420
VQQAARCFLV VGEYYGRLRA LSSLWLSRPR ETLISDETSC QTTMDLQMVQ SSRNHFSNF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3147570.0AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBankHQ1327430.0HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716312.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotO241601e-125TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A078F0E10.0A0A078F0E1_BRANA; BnaA09g48940D protein
STRINGBra018634.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55242441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein